initial commit
added read_seqant_db.pl
removed philoP and phastcons stuff from snpfile_annotate_v4.pl and renamed to snpfile_annotate_hg38.pl
1st working version of snpfile_report_sites.pl
1st real working copy of snpfile_report_sites.pl
fixes to snpfile_report_sites.pl - 1) correctly print out only variant sites for the entire experiment; 2) process snp/base file correctly
added determination of replacement versus silent site for summary variants
some fixes to snpfile_report_sites.pl
initial changes to snpfile_report_sites.pl to incorporate AA change and whether site is replacement or silent into report
resolved conflicts between master and sub_return_coding_aa for snpfile_report_sites.pl
renamed snpfile_report_sites.pl to basefile_report_sites.pl to more accurately reflect which file is used
removed snpfile_report_sites.pl
initial commit of snpfile_annotate.pl
mostly working snpfile_annoatate.pl - fixed strand issue with annotation of variant sites
fixed printing of annotation
fixed intronic/intergenic/coding output for site snpfile_annotate.pl
fixed counting of annotations and how they are printed out
snpfile_annotate_hg38.pl no longer needed as most current annotator is snpfile_annotate.pl
added option to save all annotations and save them as a JSON
minor fixes in naming of keys in %records and simplified printing of annotation for each site