Initial commit of SVN repo

A single one-time commit of all existing code was used rather than
trying to convert the SVN repo into Git format.   It was decided that
the commit history (~350 commits) would not be needed going forward.


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Corrected calculation of Np

Np was mistakenly calculated as Nx^3, rather than Nx*Ny*Nz.  I wanted to
use this small change to also test GitHub.


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Initial attempt at custom shaped networks

The plan is to allow users to generate networks of any shape using the
image analysis tool of their choice (i.e. Matlab), then import these
into PNM.  This commit contains the initial code base for translating
images to the OpenPNM list-adjacency format.


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Update to get_neighbor_pores

This changes get_neighbor_pores to return a numpy array rather than a
python list.


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Removing generated visualization files from repo


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Changed GenericGenerator to no longer call "return self._net" in the generator step, instead requiring a netowork object to be assigned explicity with the get_net function


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Removing my (jgostick) personal script file from the repo


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Some changes to the CustomGenerator module, as discussed during teleconference on August 15, 2013.


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This is a test of the git-flow feature branch functionality


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Update get_neighbor_throats to return an ndarray rather than a list when flatten if False


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Cleanup of GenericNetwork:  added flatten functionality to several methods, expanded doc strings


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Enabled 2D images as input in CustomGenerator


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Recommit of my script file


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Initial attempt to create a physics module


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Update of script file to work with branch


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Deleting some generated image files


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Updated docstring for the file (mostly to diagnose/solve a git branch/merge problem)


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Updated doc string (to test git functions)


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Revert "Updated doc string (to test git functions)"

This reverts commit 2523c09e16d0e0114a468bbacb2c1a99e9bf0a4c [formerly 6eaf50a362c511da4019ae6ede31a022eb27b2de] [formerly f4564e104950804e71ae1dcee009584b26633221].


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Revert "Updated docstring for the file (mostly to diagnose/solve a git branch/merge problem)"

This reverts commit 3bcc40305193f3a46de63f4345812c9c2ee4c27f [formerly e2fe152ba58cfa853637bc5bd805adf0ae9617eb] [formerly 8e549c3bfb3650f08aca2ba204d2904e53aa4ab4].


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