Added linear analysis pre-operations for the random matrix analysis groups
Corrected issues with Random Laplacian by permutation computation.
Added visualization of random matrix off-term elements.
Evaluating BEA or spectral clustering algorithms normalized cuts
Finished the conversion of the current v.s. Informativity and density estimation
Ended the estimation of the probabilities of the GO terms presence with , and retrieval of groups/GO nodes passing a repeated gaussian kernel test
Verified correct parsin of the Acnums from the reactoome and of the Uniprot. This was confirmed
Random sampler and GDF export implemented on the Intreractome, now they are stable too.
Modified the sourcefile.ini for chromosome loading, just as confs.py
Added support for sparse sampling and chromosome-based sampling. Implemented sampling for GuangBo; discovery of false set went successfully.
remoived the bug that failed to parse UNIPROT in case OrderedLocusNames and ORFNames were on the same line
Created a root for the interactome statistical analysis. Clustering buggy so far.
Finalized the Interactome analytical package and corrected bugs in the knowledge analysis package.
inserted the forbiddenIDs rebuild into the import commander
added the missing option to the knowledge analysis module to account for sparsity
Added RNA pre-processing module
Improved node recounting procedure
Formatted the automated RNA-seq Analysis results from counts
Merge pull request #11 from chiffa/refactoring-14.01

Refactoring 14.01