- add LIBMAUS_BAMBAM_FCIGAR32 flag
- refactor BamAlignmentReg2Bin class
- partial implementation of 32 bit cigar string length
add timing test for line counting
do not compute bin when read is unmapped
remove file which should not be in experimental branch
reorder include directives
- reorder include directives
- add encoding of long cigar strings
add documentation
add line splitting output stream
- fix line splitting output stream
- add line splitting gzip output stream
- add tests for line splitting output streams
bump version after adding line splitting output streams
do not produce an empty file if no data is written to LineSplittingPosixFdOutputStream
add missing includes
do not produce an empty file if no data is written to LineSplittingGzipOutputStream
add tests for splitting output streams and empty data sets
add splitting output stream variants in BamToFastqOutputFileSet
bump version after adding split variants in BamToFastqOutputFileSet
multiply split by 2 for fasta and 4 otherwise
avoid flushing zlib state when no new data was written
bump version after fixes in line splitting gzipped output stream
Merge branch 'master' into debian-launchpad