ensure test captures failure when there's an exception, e.g. current file does not exist exception when looking for info on a second tile when TILE_COUNT=1 and FIRST_TILE is not set
stop looking for info about a second tile when TILE_COUNT=1 and FIRST_TILE is not set
refactor much of the common pattern in Illumina2bamTest
remove superfluous throws from method definitions
Merge pull request #31 from dkj/devel

Illumina2bam should work with TILE_COUNT and no FIRST_TILE -  Fixes issue #27
Initial commit
Edited comments
Add default SUBSETS argument Y,MT; edited comments and docs
Updated copyright
Do not throw exception if @SQ dictionary is empty; edited comments
Added is-default DF option to PG header entry
Initial commit of test
Added SplitBamByChromosomes to -package-commands target; creates .jar file and javadoc in ant build
Create output files for all subsets specified on the command line. Warn if command-line subsets do not include any items from @SQ dictionary in BAM header.
Fixed spacing; replaced all TABs with blocks of 4 spaces
Merge branch 'devel' of git://github.com/iainrb/illumina2bam into devel
whitespace changes - more tab to space conversion and consistent indenting
Merge pull request #1 from dkj/devel

Whitescape changes
Major refactoring, split into only two files (target and excluded), and handle paired reads
Changed autogenerated filenames