fix numpy/ndarrayobject.h import


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4036 21428953-86e3-433d-9a34-2224224d0fc8
- setup.py: add --osx-frameworks agument
- rpc server: use register_instance


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4037 21428953-86e3-433d-9a34-2224224d0fc8
- improve amber rst/crd support
- fix pair_fitting with one atom pair


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4038 21428953-86e3-433d-9a34-2224224d0fc8
* fix h_add atom sorting
* add "metals" keyword to selection language


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4039 21428953-86e3-433d-9a34-2224224d0fc8
* fix [bugs:#135] array overrun
* apply one part of [patches:#6]
* preserve "use_shaders" setting when loading session files
* simplify pymolrc search routine
* fix CtSh-M click on group members in object menu panel
* set_key string support


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4040 21428953-86e3-433d-9a34-2224224d0fc8
* fix seq viewer background color
* add "backbone" and "sidechain" selection keywords
* fix: cealign inverts target structure


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4041 21428953-86e3-433d-9a34-2224224d0fc8
add "x" "y" "z" selection operators


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4042 21428953-86e3-433d-9a34-2224224d0fc8
* major re-work/organization of RepSphere.c and fixed sphere picking
* fix color type settings return format for hex colors (0x prefix)
* fix special keys in wizard input prompt


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4043 21428953-86e3-433d-9a34-2224224d0fc8
* fix segfault in OrthoRenderCGO
  https://sourceforge.net/p/pymol/bugs/137/
* importing.load_coords
* improve util.chainbow
* fix plugin manager PyMOLWiki URL install: strip whitespace


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4044 21428953-86e3-433d-9a34-2224224d0fc8
fix setup.py sys.argv


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4045 21428953-86e3-433d-9a34-2224224d0fc8
- enhance get_version command, quiet=-1 gives build information
- remove max_triangles setting (was unused)
- fcmp equals operator approximate match
- fix Tcl/Tk save multiple to one file


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4046 21428953-86e3-433d-9a34-2224224d0fc8
remove out-dated pymol.opengl module


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4047 21428953-86e3-433d-9a34-2224224d0fc8
* improve Filter Wizard, "Create Filtered Object"
* consider "ignore_pdb_segi" setting when saving to PDB
* delete obsolete files (sglite, ExtensionClass)
* some C code refactoring


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4048 21428953-86e3-433d-9a34-2224224d0fc8
fix get_setting_updates


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4049 21428953-86e3-433d-9a34-2224224d0fc8
fix splash.png sRGB profile, https://sourceforge.net/p/pymol/bugs/136/


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4050 21428953-86e3-433d-9a34-2224224d0fc8
* fix segfault in SceneImagePrepareImpl
* fix dihedral rep for objects with >20 states
* cmd.png: consider image_dots_per_inch with _unit2px
* preset.py: delete temporary selections
* fixed CGO demo crash in CGOSimplify
* print OpenGL info not only to STDOUT, but to PyMOL text output
* fix tcl/tk window placement on OS X 10.9
* get_viewport: do not print int as float
* fix: do not set wiz.cmd to None when saving PSE
* fix cartoon picking bug
* fix crash during selection
* fix two_sided_lighting cartoon shader bug
* fix isolevel command for isosurface with shaders
* mol2 writing with multiple objects
* fix removing non-polar hydrogens
* fix crash during select bychain
* fixed line_as_cylinder bug
* fixed smooth half bonds with line as cylinders
* get_bond command


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4051 21428953-86e3-433d-9a34-2224224d0fc8
fix label shader fog blending


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4052 21428953-86e3-433d-9a34-2224224d0fc8
sf #143 and other fixes

* remove self assignments
  http://sourceforge.net/p/pymol/bugs/143/
* cmd.load_callback: import fixed version to api
* don't sort atoms in discrete objects
* fix resizing issue for lines on ATI cards
* fix reset stereo with reinitialize
* fix draw stereo


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4053 21428953-86e3-433d-9a34-2224224d0fc8
fixes, version bump 1.6.9.0

* fix antialiasing internal edges, ray tracing
* fix clicking volume panel dots at zero alpha
* fix molecular weight w/ aromatic bonds & missing hydrogens
* fixed sequence text/background when scrollbar isn't shown
* remove deprecated mray command


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4054 21428953-86e3-433d-9a34-2224224d0fc8
submenus can be callables which return a list


git-svn-id: svn://svn.code.sf.net/p/pymol/code/trunk@4055 21428953-86e3-433d-9a34-2224224d0fc8