test dataset


Former-commit-id: a050d41f124fc506d526c913d427d783ade867ca
use VERSION module in help msg


Former-commit-id: acd0cb90f2458e1e10708e313b51d8c5d0d91036
remove bowtie/usearch requirement


Former-commit-id: c4f3ec74bfe5270ad975fca4f73ae1c3382aedc1
add script to run sanity-check


Former-commit-id: 7a632b29d601ff18aed2dc54348fdea110990d8c
transrater allows separate running of metric types


Former-commit-id: 246ee0e148d11ce85533ec7cd3b43b9e8132b8e7
run each metric only if inputs given #11 #13


Former-commit-id: 0e44bb65e28399fdb0a756048d83971b79b48231
it is now possible to omit a reference


Former-commit-id: cef67358c463d0f5281b0af78ed7a4a1293536e5
Merge pull request #16 from cboursnell/master

it is now possible to omit a reference

Former-commit-id: b75356fc8a9091dae662f740e50b43352f98f088
Merge branch 'master' of github.com:Blahah/transrate

Conflicts:
	lib/transrate/comparative_metrics.rb
	lib/transrate/transrater.rb

Former-commit-id: db457f70695a22c6544164b313dc6cea61404ad4
merge local version


Former-commit-id: 38c5cc680a68467589ef85a01c4eba0df422f34b
add large test files to gitignore


Former-commit-id: d5eb26ce52a9047ca52f4d2aa3a92a3788a874fe
update outdated dependencies


Former-commit-id: 366d28d31d4849683f2e52646b232b3dbda5763d
parallel contig metric evaluation

- added ability to analyse contigs in parallel
- added rich logging capability
- fixed various minor bugs
- removed superfluous files


Former-commit-id: 74f77193dda7270e04d7823c2fc3ef2147617b35
remove debug logging from usearch


Former-commit-id: 2c4cf724b12414083afa11a23358fc5e3e0841a2
thread race condition fixed


Former-commit-id: 7e5d59c9c238d76e5c375d58410fdb85e536021f
style changes according to the hound


Former-commit-id: 0c3738c988a5178c2cb66a8091e2f3d23c40d5cd
first tests


Former-commit-id: f92b1cbf681bd346b0e8eb4abb6c22be4c78fd79
Merge pull request #21 from cboursnell/master

thread race condition fixed

Former-commit-id: d4181cfd3a42364179eda567d7a3c6e98bf1698d
Inline C version of orf_length


Former-commit-id: 2ff3ec40a24d534030a67c211fa1af6431810a3e
Incline C version of orf_length, uncomment logger


Former-commit-id: 79690d92ae10e4f054de1198ec0b31fce5985332