Merge pull request #85 from PatrickDeelen/master

Impute2 small update
Merge pull request #86 from PatrickDeelen/master

Fix bug in worksheet test
to merge
Added genotype aligner step + Other minor changes
corrected typo in
Output location for generated FinalReport changed.
make output of liftover more clear
removed root. It should be in an exra file
removed root. It should be an extra file
removed root. It should be an extra worksheet
removed debugging output
changing the location of resulted files in order to compy with rest imputation workflows
removed $outputFolderChr
Merge pull request #89 from Gerbenvandervries/master

Output directory for generated FinalReport changed.
Merge pull request #90 from PatrickDeelen/master

Fixed bins
Lifelines update genotype pipeline
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Merge pull request #91 from freerkvandijk/master

Lifelines update genotype pipeline
small bugfix in PrepareStudy protocol
Update on walltimes