Read chromosome lengths from a JSON file in the Sequenom/Fluidigm plex dir
Upload required chromosome JSON file to temporary iRODS collection
Initial commit
Use variable instead of repeated string literal for Fluidigm/Sequenom data type
Correct script test to work in dev iRODS; tidy up manifest upload to iRODS
Add genome instance variable to VCFConverter; use to determine snpset name; can specify on command line
Store default genome name in variable
Read location of chromosome JSON from manifest iRODS metadata
Make SNPSet name read-only