Create trunk copy
Change copyright notices now that MIT has approved open source distribution.
Changed the mode for newly created files to 0666. This allows less strict permissions with umask properly set (e.g. 0002 vs. 0022).
initial source code. It is BUGGY!
bgzip is more like gzip in its command-line interface
* tabix-0.0.0-1 (r500) * apparently working
* tabix-0.0.0-2 (r501) * accelerate ti_readline()
* tabix-0.0.0-3 (r502) * support meta lines (not tested) * I am going to make the index file in the BGZF format
* tabix-0.0.0-4 (r503) * index files are bgzf compressed
* tabix-0.0.0-5 (r504) * fixed a critical bug in fetching data (a typo in fact) * support SAM (tested on ex1.sam) and VCF (not tested) * improve the command-line interface
documentation
Release tabix-0.1.0
Release tabix-0.1.1
* tabix-0.1.3 (r543) * fixed another off-by-one bug
removed a line of debugging code
Added the -l option for listing chromosomes
Fix in src/dst file detection and slight change of behaviour
The behaviour changed slightly to mimic gzip. Detect if std descriptors are connected to the terminal.
* added the format specification * fixed a typo in bgzip
* tabix-0.1.3-2 (r555) * do not overwrite index file by default * a little code cleanup