Feature/usage profile

This modification will make pindelInput run in half the time on hosts with sufficient cores.  This was a concern for both 8 and 32 core hosts, attached is an example usage graph for this section of the workflow on x32 host.

![screen shot 2014-11-07 at 15 59 34](https://cloud.githubusercontent.com/assets/3740323/4955702/38e866f8-6697-11e4-8563-7189353e10cd.png)