R strings weren't right. They have been corrected
Just another tidy up

This has nothing to do with the code, but with the test itself.
DeSeq.pm should be unless when in test mode

Also, we need to run pathogen R and not the /software R when running on
the farm
Reverting back to original R shebang
Merge remote-tracking branch 'upstream/master'
testing presence of all expected files
testing presence of all expected files
creating filehandle to store coverageplots for all sequences
test should fail when checking values in all_sequences coverageplot file
tests should now pass, eventhough the output in the files is not yet the final output
tests should now pass, eventhough the output in the files is not yet the final output - typo corrected
replaced space for tab
replaced padding string with local padding string, although not sure I want to keep this
removed padding string altogether
reimplemented padding string this time with proper tab separation
need to inspect the all_sequences coverage file
need to verify the filename, are there more than one
testing the output format
corrected typo
corrected another typo