blat all TEs at once
Merge branch 'live' into RelocaTE-1-0-4
updated README
updated README
updated README
updated README
fixed error with remove_tree
allow more relaxed flankers align to ref option -ra 1
made relaxed align of flankers even more relaxed
added -rr relaxed reference align:allow variable sized fulllen matches of TEs
reference insertion must be < 15kb
Added Chr6 to sample data
cleaned up script
fixed bug, now correct coors are reported when using UNK
updated README
updated README