Fixes #1943: Fixed behaviour of AbstractCyAction.get/setName()
Refs #1679 : Initial changes for VizMapper UI redesign--default values editor, vizmap editor and bypass all merged in the same visual properties sheet ("Visual Styles" panel).

Change-Id: I19458d294aa52cc189e7b5d3edb1d24585ffdbbd
Fixes #1874: Added support for multiple instances
Fixes #1916: Fixed unimproved packages.  Added regression test.
Changed TunableDialog so that we don't change the size after we pack.
This fixes the ugly single-tunable dialogs.

Change-Id: Idef453cd7d1a7910f2510e4da4878db6e187c849
Be consistent with use of fonts by referring to GUIDefaults

Change-Id: I24e30d912cf3bbe97d88aa9fa8040043064533fa
Change to allow methods that return list of rows or columns always return the same ordered list

Change-Id: Iabce63ee5919253c5cebf3279cc93a2c1311214c
Merge branch 'develop' of git+ssh://github.com/cytoscape/cytoscape-impl into develop
Updated to Paxtools v4.2.0
Refs #1679 : Fixed issue with no default value icons when the session has no network views.

Change-Id: Icb9dee8f3dc7f383e22889bd3eb9d44ea8faaf1a
Update Tunables to add context (gui vs. nongui) and tooltips

Change-Id: I89fe10a13b3e1a1417fa60a5d1be53b1d1c95e6f
Fixes #1901: Added Edit context menu to browser table to workaround issue in Linux where list cells can't be double-clicked because of popup
Fixes #1939: Fixed issues with default values and virtual columns.  Fixed BrowserTableModel to check for default values.
Fixes #1900: Any base network can now be removed from the root-network if the root-network has another subnetwork to replace it. The Session XGMML Writer now tries to prevent a disposed network from being serialized.

Change-Id: I71f4f27fa4c0714c3822c3ed5f791f342ad36329
Add two new methods to CyNetworkTableManager to assist app developers:
getTableType, which returns the target type of a table (CyNode, CyEdge,
or CyNetwork), and getTableNamespace, which returns the table namespace.

Change-Id: I8e5e00ad9939e118a6079251fae6d231c6ff0592
More tunable cleanup

Change-Id: I0bc400e8358cd5caf62dd250e3b8d7814656fd7c
Fixes #1924: GraphML Reader now supports int, long, float and boolean attributes

Change-Id: I31cc7f4fe9e488e6ae5096989c3ee7e3fc0ae8fb
changed how dependencies are embedded into biopax and cpath2 bundles; also, service-api wasn't among managed dependencies in cpath-impl parent pom, etc. (a side-effect was the jar was embedded into app's jar due to compile-scope transitive dependencies)
Fixes #1959: NetworkAnalyzer now creates local columns

Change-Id: I00a092acd382c7e36b12b67311a0e7566c222f6f
Fixes #1961: It now shows confirmation dialog when overwriting existing file, even if the file extension is not specified

Change-Id: Ia2b5cbfb84e86c81a6d7fe92073fe0b6d9bc23a4