All I did was turn MATLAB on (the true/false flag in brainsearch.py)
Made some more edits. Of note, I think the only thing I lack from DF's .mat is the VTK header info (pixel number and spacing).
Merge pull request #4 from fuentesdt/master

header
Merge branch 'master' into local
Merge pull request #5 from fuentesdt/master

ENH: @sjfahr voi updates
Merge branch 'master' into local
This iteration of 'fast_temp*' is ready for testing (I don't expect it to work, but I don't know what it's missing).
I corrected some errors in 'fast_temp*.m' by running one iteration (i.e. reading one 'TmpDataInput.mat' file and returning one objective function). My corrections: DF was sending some numerical data as strings and some as numbers. The strings I used MATLAB's function 'str2num'. Those numbers passed to me were recorded as singles that I needed to make doubles because of precision concerns. Finally, I had some path issues I needed to correct.

I think that the script could work now
Made the script go back to the directory it starts in.
BUG: dakmatlab setup run only once
This has the LOOCV algortihm. It nearly works for my MATLAB data, but not DF's data.

There are also some small edits to f.m and fast_temperature_obj_fxn.m to improve the MRTI cropping.
Trying to make the LOOCV algorithm run on 5 ablations.
These files have been modified to incorporate the new patient database.
Added old scripts
added database
I tried to resolve the merge errors.

Merge branch 'master' of https://github.com/fuentesdt/optpp_pds into fuentesdt-master

Conflicts:
	brainsearch.py
	exe.heating.txt
Merge pull request #7 from fuentesdt/master

ENH: @sjfahr sorry forgot to push
Merge pull request #8 from fuentesdt/master

BUG: forgot this...
Merge pull request #13 from sjfahr/master

sjfahr updates