Initial import
Added a Ath parser together with test-files.
Added the cakephp fresh install
Moved the website to a different location to enable working with different versions
Baked the first site
Now really added all the baked files; Added the DDL
Moved XPathParser to older stuff
Added output format CSV for the Ath GFF parser + tests
Don't commit the tmp files of the site
Added papers, data; Committed old unsaved changes involving saving of processed data
Added a dump of the current db
Upgraded CakePHP 1.2.6 > 1.3.1
Added the new site; Added parsers for the Exp data; Added a parse all script; Added a script to test indexing on the sequences
Regenerated the website with the new schema; Added menu generation and caching
Finished parsing GFF and FASTA for the annotations and experiments; Added a menu to the site; Added some first layouting; Added AJAX based pagination for the annotations; Added alternative fast but unprecise count of rows for InnoDB
MAde AJAX pagination with the reusal of views :)
REthought the way counting works and removed the table lookup when the count was 0; Added the annotations mapping to the srna on the srna view page
Mended a bug in the GFF::Ath2sRNA script which fixed the weird 176k exon annotation. Also added a Chromosome model to make sure we have a length of the chromosome stored somewhere :)
cleaned up all the views; Added chromosomes MCV
Added new test files for the parsers; Extracted the chromosome part out of the cDNA parser