Minor cleanup on interleaved FASTQ input format. Added dependency which is necessary for running downstream.
Merge pull request #282 from fnothaft/ifq-fix

Minor cleanup on interleaved FASTQ input format.
fix refname comment
Merge pull request #283 from hammerlab/refname-comment

Fix reference name comment
Removing ADAM format directory, and updating avro data file path and pom.xmls for bdg-formats move.