redid makefile and install; unused variables removed; yaml configs moved in from owltools; delinting using rhino warnings; workaround for rhino issue in generate static data (-opt -1)

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4763 6f0e8829-b336-0410-acfb-cb9b228023ad
generate a local-only perl config for bundle generation

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4764 6f0e8829-b336-0410-acfb-cb9b228023ad
generate a local-only perl config for bundle generation

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4765 6f0e8829-b336-0410-acfb-cb9b228023ad
work around for old pathing bug with a now non-existant file

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4767 6f0e8829-b336-0410-acfb-cb9b228023ad
fixes and additions to make it all start working with jenkins

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4772 6f0e8829-b336-0410-acfb-cb9b228023ad
small changes to build--refresh now puts current data into bbop-js as well

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4774 6f0e8829-b336-0410-acfb-cb9b228023ad
doc fixes; working towards filter shield

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4775 6f0e8829-b336-0410-acfb-cb9b228023ad
shield to allow full access to filters; docs; tests

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4776 6f0e8829-b336-0410-acfb-cb9b228023ad
filter shield with wait

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4777 6f0e8829-b336-0410-acfb-cb9b228023ad
attempt to diagnose strange bug on server by making errors more severe

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4778 6f0e8829-b336-0410-acfb-cb9b228023ad
a script to help get a handle on the irritations of reloading GOlr from cron and cli

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4779 6f0e8829-b336-0410-acfb-cb9b228023ad
a script to help get a handle on the irritations of reloading GOlr from cron and cli

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4780 6f0e8829-b336-0410-acfb-cb9b228023ad
a script to help get a handle on the irritations of reloading GOlr from cron and cli

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4781 6f0e8829-b336-0410-acfb-cb9b228023ad
a slightly better way to indicate waiting

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4782 6f0e8829-b336-0410-acfb-cb9b228023ad
active stub buttons for galaxy and cart; hide/show on large search table entries

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4783 6f0e8829-b336-0410-acfb-cb9b228023ad
refresh

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4786 6f0e8829-b336-0410-acfb-cb9b228023ad
refresh

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4787 6f0e8829-b336-0410-acfb-cb9b228023ad
refresh

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4788 6f0e8829-b336-0410-acfb-cb9b228023ad
visualize now working on top of GOlr (GOBO removed); removed some blocks subset detection was creating; recativated a lot of SVG-related 1.x code; docs

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4789 6f0e8829-b336-0410-acfb-cb9b228023ad
working commit on start of js repl

git-svn-id: https://geneontology.svn.sourceforge.net/svnroot/geneontology/AmiGO/trunk@4790 6f0e8829-b336-0410-acfb-cb9b228023ad