written documentation for flush command
extracted "No options provided" error as a common function
Merge branch 'master' of https://github.com/clarencecastillo/dose

# By Clarence Castillo
# Via clarencecastillo (2) and Clarence Castillo (1)
* 'master' of https://github.com/clarencecastillo/dose:
  Examples of analyzing hamming's distance inside an eco_cell
  Implemented main analytical functions for simulation analysis
  Modified reporting function to print organism identity, chromosome and parents
  Added *.csv and project files to ignore list
Merge branch 'master' of https://github.com/clarencecastillo/dose

# By Clarence Castillo
# Via Clarence Castillo
* 'master' of https://github.com/clarencecastillo/dose:
  Initial commit of simulations 09 and 10
  Reconstructed analysis files
  Reverted sims 03, 04, 05
  Reconstructed hamming_distance function to return data faster
  Renamed analysis files
  Renamed analysis files
  Changed sample simulation's (03, 04, 05) chromosome size and background mutation
  Initial commit of organism level simulation analysis
  Implemented average fuction inside analytics
Corrected all header documentation
Added and corrected documentation
removed PDF documentation generation
added exclusions
changed version to 1.0.0
added project documentation site
reduced the description text
update documentation
Merge pull request #70 from clarencecastillo/master

Initial commit of examples 11 and 12
Merge pull request #71 from clarencecastillo/master

Initial commit of example 13
Merge pull request #72 from clarencecastillo/master

Rewritten example 13
update to version 1.0.1
Added function documentation and format codes to 80 characters per line
Format codes to 80 characters per line
updated to version 1.0.2
Merge branch 'master' of https://github.com/clarencecastillo/dose

# By Clarence Castillo
# Via Clarence Castillo
* 'master' of https://github.com/clarencecastillo/dose:
  Fixed harcoded population name bug when reviving populations from *.gap file
  Initial commit of analysis scripts for examples 13 and 14
  Update of example 13's documentation and initial commit of example 14
  Updated .gitignore files to include *.xlsx, *.gap and *.eco files