AE: Quick fix to correct a typo. Merge branch 'hotfix/AE_Al100-pt2-correction'
Merge branch 'develop' of github.com:thnam/AlcapDAQ into develop
Merge branch 'develop' of github.com:thnam/AlcapDAQ into develop
Moved all files into the appropriate directory, to be summarized at a
later date on the elog.  The code is not expected to work as yet as the
Makefile will now need updating.
Updates to Makefile and files.make to handle the new directory
structure.  If new directories are added or renamed, change the
contents of src/files.make.
Removed old includes for some modules files which are no longer needed.
Added handling of missing ROOT setup script in the thisdaq.sh script
Removed ProcessCorrectionFile (to the deprecated code sub-directory)
and removed it's use from the main program.
Renamed utils.h to CommandLine.h and for .cpp.
Moved the CommandLine.* files into the framework sub-directory
Merge branch 'develop' of github.com:thnam/AlcapDAQ into develop
Merge branch 'feature/BK_tidy_rootana_src' into develop
This rearranges the source code of the src directory so that we can see
more clearly the purpose of each class, just from the directory
structure