Missing score1/2 values for InterfaceClusterScore of parsed biounits
Restructuring mol viewers code: now all code in eppic project
Fixed issue in model adaptor: geometry method now filled at right time
- rationalised method names
New cleaner way of outputting csv file
- at the moment only .interfaces file is written in that way
Scores now produced for all methods in a single csv file
- all subfiles for each of the methods not produced anymore
- the call reasons and warnings are not written to scores file
- fixed issue in model filling: was not writing score values for final
method
Not producing zip file anymore, moved pdb-biounit list writing to
CsvWriter
Fixing classpath: target class dir was not pointing to mvn's default
Finalised the cleanup of text file writing
- all files related to evol methods (A.log, A.aln, A.entropies) now
written from model (A.fa file is now gone). All of them will only be
written if -w not specified
- introduced some new needed fields in model: pdbStart/pdbEnd,
subjectStart/subjectEnd
- new command line parameter -p: only if -p specified will pdb files be
written, if -l specified -p is forced