seqtk 1.0
prodigal 2.6.1
ssake 3.8.2: New formula

SSAKE is a de novo assembler for short DNA sequence reads.
ogdraw: Add DOI and tag
ogdraw: Set PERL5LIB in the test
ogdraw: Do not install perllocal.pod

Use make pure_install rather than make install.
ogdraw: Install irscan

drawgenemap: Add --irscan and --ircoord options
ogdraw: Fix the test
ncl 2.1.18 (new formula)

NEXUS Class Library is a C++ library for parsing NEXUS files.
seqtk 1.0-r68

Reverts f7986f3.
vtk: add qt5 support

Closes #1194.
vips 7.40.9

Closes #1198.
samtools 1.0
htslib 1.1
samtools 1.1
bcftools 1.1
tabtk 2014-09-22-r9
pcl: Add HEAD support

Closes #1197.
tabtk: fix r9 url
exonerate 2.4.0 devel