samtools-0.1 0.1.119 (new formula)

Ref e41bc0b.

Closes #1280.

Signed-off-by: Ian Lancaster <ilancaster@gmail.com>
samtools-0.1: add 0.1.19 bottle.
corset: build with older samtools

Fixes #1493.
Closes #1494.

Signed-off-by: Ian Lancaster <ilancaster@gmail.com>
corset: add 1.02 bottle.
clustal-omega: style cleanup

Closes #1495.

Signed-off-by: Ian Lancaster <ilancaster@gmail.com>
clustal-omega: add 1.2.0 bottle.
clustal-w: fails with gcc-4.2

Closes #1496.

Signed-off-by: Ian Lancaster <ilancaster@gmail.com>
clustal-w: add 2.1 bottle.
ADOL-C: always build in C++11 mode.

http://list.coin-or.org/pipermail/adol-c/2014-December/001023.html

Closes #1501.
celera-assembler 8.2

Closes #1353.

Closes #1502.

Signed-off-by: Ian Lancaster <ilancaster@gmail.com>
celera-assembler: add 8.2 bottle.
petsc: link with opt paths

Closes #1503.

Signed-off-by: Ian Lancaster <ilancaster@gmail.com>
petsc: update 3.5.2_1 bottle.
IPOPT: use sequential MUMPS.

Closes #1505.
SLEPc: version 3.5.3

Closes #1507.
ipopt: update 3.11.9_1 bottle.
slepc: update 3.5.3 bottle.
ate-pairing 1.2

Closes #1508.

Signed-off-by: Ian Lancaster <ilancaster@gmail.com>
ate-pairing: add 1.2 bottle.
petsc: bump revision for open-mpi

Fixes #1511.

Closes #1512.

Signed-off-by: Ian Lancaster <ilancaster@gmail.com>