The scores of SSW are 30,60,60,1.
Do not check ((std::size_t) iss.tellg()) != s.size() in
utilities/miscellaneous/string_converter.h
Tolerant lower-case bases in the given reference (fasta) file.
The update of ssw_cpp;
Bug fix for the number of mismatch calculation
Makefile
-       @rm api/libscissors.a
+       @rm -rf api/libscissors.a