initial commit of double checked scripts for simple pipeline usage.
needs to clean code, write docs
filtered data (only sb that appear exactly once in each genome are considered)
this files are created by "filter.py" and further overwritten with "renaming_sb_ids.py" script in order to create grimm suitable sb ids, as a consequtive range of integers
data that was translated from infercars to grimm format
this files are created by "infercars_to_grimm.py" script
data that was translated from grimm format to adjacencies (pairs of vertices of synteny blocks)
this files are created by "grimm_to_adj.py" script
oops, forgot init file, though it suites for only 2.7 reasons, as it performs no actions, and 3.4 is just too good =)
counting data for breakpoint between genome pairs, that is computed with the help of "count_bp.py" script
MGRA1 configurating files for running MGRA on 100K blocks
Merge branch 'master' of https://github.com/GermanDemidov/NIR2
updated data from German