Commit made by the Bioconductor Git-SVN bridge.
Consists of 39 commit(s).

Commit information:

    Commit id: 0ca5bf162974205b2b25a81aa38717b13185c044
    Commit message:
    add unit tests for checkVignetteDir()
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-10T15:37:52-08:00

    Commit id: a472c5af5ce8f24c66f93401e636a19ce207cb23
    Commit message:
    start to work on version checking
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-10T17:17:47-08:00

    Commit id: fef9054e959d4e31fa6127a856c187cebded8f84
    Commit message:
    add version number checks
    Committed by dtenenba <dtenenba at fhcrc.org>
    Commit date: 2014-01-12T12:43:30-08:00

    Commit id: 475c9d407efc4964dcd697ce2de6f8f7a18b0601
    Commit message:
    add biocViews checks
    Committed by dtenenba <dtenenba at fhcrc.org>
    Commit date: 2014-01-12T13:12:21-08:00

    Commit id: 24deeedea3be1fde3b864ffcfbc974f42121c69c
    Commit message:
    show summary
    Committed by dtenenba <dtenenba at fhcrc.org>
    Commit date: 2014-01-12T13:29:52-08:00

    Commit id: a74ed8b31330cba956c129720195c209aad38062
    Commit message:
    cosmetic
    Committed by dtenenba <dtenenba at fhcrc.org>
    Commit date: 2014-01-12T13:33:37-08:00

    Commit id: ed15d187c34f25a6754cb4f91e64e0dd831d4c3b
    Commit message:
    mark todo done
    Committed by dtenenba <dtenenba at fhcrc.org>
    Commit date: 2014-01-12T13:44:25-08:00

    Commit id: 8b2009ee82eb72183d28d5233ec47adbcea7ec2a
    Commit message:
    mark another todo as done
    Committed by dtenenba <dtenenba at fhcrc.org>
    Commit date: 2014-01-12T13:47:42-08:00

    Commit id: 9b8209fe7176eab7ae793c2a91afbb7693276ce8
    Commit message:
    more detailed biocViews checking
    Committed by dtenenba <dtenenba at fhcrc.org>
    Commit date: 2014-01-12T18:47:06-08:00

    Commit id: 0c43af715bf2cd342656d8fcbc260babd77f620d
    Commit message:
    fix a bug in determining what's a vignette source
    Committed by dtenenba <dtenenba at fhcrc.org>
    Commit date: 2014-01-12T19:30:03-08:00

    Commit id: 1f478eecd8de61d4be145f4f28afd5b2bbda05b8
    Commit message:
    add a todo
    Committed by dtenenba <dtenenba at fhcrc.org>
    Commit date: 2014-01-12T20:24:33-08:00

    Commit id: 09126d3920f88b2f9ab515be4dd0a24b9dc26768
    Commit message:
    add another todo
    Committed by dtenenba <dtenenba at fhcrc.org>
    Commit date: 2014-01-12T20:29:13-08:00

    Commit id: 19b05309c3e1fee19770825ab0f29f8585d47e93
    Commit message:
    partial work on BBS compliance check
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-14T17:34:45-08:00

    Commit id: e92f0859d8bac21da0135c68ca48b76b02f2567f
    Commit message:
    meaningless change
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-14T17:35:54-08:00

    Commit id: 49488b25e0badf9a0d638af0ae531afd9a5a8490
    Commit message:
    add unit test to checkBBScompatibility()
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-15T12:38:05-08:00

    Commit id: fc2788f4f00244a6e6e39b18223407c0aac9b770
    Commit message:
    check for unit tests
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-15T14:10:19-08:00

    Commit id: 10dc1b9f6f60b1ee25224125e688fc412864fe7f
    Commit message:
    more todos from meeting with Martin
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-15T17:22:47-08:00

    Commit id: 8e153d4fb669008541a2e3fffa83474c81a74c8a
    Commit message:
    yet more todos
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-15T17:25:09-08:00

    Commit id: 5a51794cb93a0e96a905bfe18f1d63fb9141a35c
    Commit message:
    notes on parsing T/F from code
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-16T12:04:19-08:00

    Commit id: b326bb94412be6b30de2de9b8d9893226dddfd3f
    Commit message:
    add ability to install and load package to be checked
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-17T12:27:42-08:00

    Commit id: 2ae2c5cadce085fd7b693c7a580a25264b8aa55c
    Commit message:
    cleanup install/load
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-17T13:06:07-08:00

    Commit id: ea40838ed97f22718be08ec670b85a63f03107fd
    Commit message:
    add --no-check-vignettes option
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-17T14:19:05-08:00

    Commit id: ecc5489280252940543a41956aa2a3b7e6669843
    Commit message:
    cleanup
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-17T14:29:07-08:00

    Commit id: d3c81634dd35b5563cf2769be63a535d2c8f9a63
    Commit message:
    add --new-package check option
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-17T15:15:48-08:00

    Commit id: f8bd11f4c345ce47795268a56f6b7ead269ca845
    Commit message:
    add namespace import suggestions
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-17T15:49:56-08:00

    Commit id: 2ecfdd2654fc280d0e04ca635bedec555f1d23ff
    Commit message:
    start vignette
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-18T13:19:03-08:00

    Commit id: 35b730e17cfbb19073ecf8ad72aeb8d6d4a38ed9
    Commit message:
    vignette tweaks, move codetoolsBioC to Enhances
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-18T13:26:48-08:00

    Commit id: 93f7949413ca22d6b24214143c2487e854289483
    Commit message:
    remove codetoolsBioC from Imports
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-18T13:28:52-08:00

    Commit id: 2d7b5d2b69b5eea21ee8213c9b42d750175c863b
    Commit message:
    store error messages, not numbers
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-18T13:46:52-08:00

    Commit id: 0be1a598357b51699a7c92fc3d2355189fa28e92
    Commit message:
    errors no longer stop BiocCheck cold
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-18T14:50:37-08:00

    Commit id: c60ae2c87e8cba4cfc0e86c83eba55437882b2ff
    Commit message:
    exit with error code if errors occurred and we were called from command loine
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-18T14:52:16-08:00

    Commit id: 672a1654bdb7811509b6cbdbc310c5f108bd4cb5
    Commit message:
    start to rename error to required, warning to recommended
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-18T14:57:07-08:00

    Commit id: 7bacb1aa3202bfa9e97ca106126a849b945d3101
    Commit message:
    check for deprecated packages
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-18T16:30:45-08:00

    Commit id: 02c29d32c7eeadb158c65e50077aede8461c40dc
    Commit message:
    start on code parsing code
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-18T17:18:57-08:00

    Commit id: 7455c241a711b3cc4a711ca881be9368723c444e
    Commit message:
    Add test files, add infrastructure for parsing code
    and checking for symbols of interest. Not quite working though.
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-18T18:22:58-08:00

    Commit id: 70280c8911cd47bc952766d756b0bcd491483320
    Commit message:
    more work on T/F and .C
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-19T19:14:08-08:00

    Commit id: 260e77b4de612a496582f2fa8f509160ae123c99
    Commit message:
    Add DESCRIPTION/NAMESPACE consistency check
    Committed by dtenenba <dtenenba at fhcrc.org>
    Commit date: 2014-01-20T15:26:47-08:00

    Commit id: 2cfcf785abb9aaad6045af5932571d1aa7acc1e9
    Commit message:
    add installation instructions to vignette
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-20T18:58:28-08:00

    Commit id: 1205a780963c4f29aa28bae3ae54db0ea473971d
    Commit message:
    cosmetic
    Committed by Dan Tenenbaum <dtenenba at fhcrc.org>
    Commit date: 2014-01-20T23:17:36-08:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocCheck@85686 bc3139a8-67e5-0310-9ffc-ced21a209358
add suggestions from Nate