galib: fix clang error with undeclared identifiers

Closes #908.
mummer: Add DOI
netcdf: patch to fix hdf5 1.8.13 missing symbols

HDF5 1.8.13 removes symbols related to MPI POSIX VFD, leading to
errors when linking hdf5 and netcdf5 such as "undefined reference to
`_H5Pset_fapl_mpiposix’".

The patch has already been added to netcdf, and will be included
in the next release.

Fixes #911.
Closes #916.
armadillo 4.300.3

Copy examples/ directory to prefix.

Closes #912.
bali-phy: switch to needs :cxx11

Closes #925.
bali-phy 2.3.4

Closes #922.
root: tabs -> spaces
ensembl-tools: update shasum, add head
therion 5.3.15

Closes #924.
htslib: Remove razf

razf has been removed in HEAD. See
https://github.com/samtools/htslib/pull/74
htslib: Conflicts with tabix

Both htslib and tabix install bin/tabix
htslib: Add a test
samtools: Do not build razip

razip has been removed upstream. See
https://github.com/samtools/htslib/pull/74
samtools: Fix a typo. Htslib should be htslib
samtools: 0.2.0-rc8 devel
elph: fails with clang
ucsc-genome-browser 300
ceres-solver 1.9.0, update home page

Closes #928.
mathgl: support Qt 4 or 5 with option parameter

Fixes #897.
Closes #923.
kmergenie 1.6476

Add DOI