use posix spin lock for AutoArray if available
use posix spin lock for LockedBool if available
make generation of unique PG IDs in bam header merging subquadratic
add specialised file stream writing class for linux
add test program
improve progress messages
check whether file is on local storage before running output tests in testlinuxstreamingwrite
add methods for checking whether a suffix/prefix alignment starts with a deletion or ends in an insertion
add method for removing SQ header lines
add method for removing SQ lines fro a BAM header
add methods for getting front and back soft clipping
bump version after adding methods for getting front and back soft clipping of an alignment
Merge branch 'experimental'