Initial commit of SVN repo

A single one-time commit of all existing code was used rather than
trying to convert the SVN repo into Git format.   It was decided that
the commit history (~350 commits) would not be needed going forward.


Former-commit-id: 136bcb931c26c35b1d36db5a5494a8326eb14c73
Corrected calculation of Np

Np was mistakenly calculated as Nx^3, rather than Nx*Ny*Nz.  I wanted to
use this small change to also test GitHub.


Former-commit-id: 25d5e379d213baab9ba53ffcc640b5008b8f58ec
Initial attempt at custom shaped networks

The plan is to allow users to generate networks of any shape using the
image analysis tool of their choice (i.e. Matlab), then import these
into PNM.  This commit contains the initial code base for translating
images to the OpenPNM list-adjacency format.


Former-commit-id: 349938192fdb8af70eb81e850d09867d82c6451e
Update to get_neighbor_pores

This changes get_neighbor_pores to return a numpy array rather than a
python list.


Former-commit-id: cddc1c683142a7e3a97bf3258f07bf03db518901
Removing generated visualization files from repo


Former-commit-id: 78482a3984ed000719a405bb8c68e9a56c20bb3b
Changed GenericGenerator to no longer call "return self._net" in the generator step, instead requiring a netowork object to be assigned explicity with the get_net function


Former-commit-id: 0a22d8f7811702a3327364e79894913f48d00f6c
Removing my (jgostick) personal script file from the repo


Former-commit-id: b9b87ac4439d0149495f730e7bc87955df0ef1d2
Some changes to the CustomGenerator module, as discussed during teleconference on August 15, 2013.


Former-commit-id: eb115966c08e491f947e7116b9824df0a4fc62d8
This is a test of the git-flow feature branch functionality


Former-commit-id: 3c25e9bf2605eb718f821b7b965d616bc17bac49
Update get_neighbor_throats to return an ndarray rather than a list when flatten if False


Former-commit-id: 1c76aef56a3bfccc56d512e4aa13bfa0fea86450
Cleanup of GenericNetwork:  added flatten functionality to several methods, expanded doc strings


Former-commit-id: 61cd2029f298af74f802973eeb9d64193b437c78
Enabled 2D images as input in CustomGenerator


Former-commit-id: fb2b53c151040e0a3ea6f85690775bf40dfc2ae6
Recommit of my script file


Former-commit-id: a5c2e003457610d413a97d3a1da9d45516243f06
Initial attempt to create a physics module


Former-commit-id: df29f353700e00c552046e43917ae6630de4513e
Update of script file to work with branch


Former-commit-id: 95d8b83a12ddde4cd5ac7106cf6fb8151bcf0f61
Deleting some generated image files


Former-commit-id: b240d8d450f459703a390bffa991413583c500c7
Updated docstring for the file (mostly to diagnose/solve a git branch/merge problem)


Former-commit-id: 8e549c3bfb3650f08aca2ba204d2904e53aa4ab4
Updated doc string (to test git functions)


Former-commit-id: f4564e104950804e71ae1dcee009584b26633221
Revert "Updated doc string (to test git functions)"

This reverts commit 6eaf50a362c511da4019ae6ede31a022eb27b2de [formerly f4564e104950804e71ae1dcee009584b26633221].


Former-commit-id: eab3246b1edf6408fc1ff2b6343c5f4a33c95490
Revert "Updated docstring for the file (mostly to diagnose/solve a git branch/merge problem)"

This reverts commit e2fe152ba58cfa853637bc5bd805adf0ae9617eb [formerly 8e549c3bfb3650f08aca2ba204d2904e53aa4ab4].


Former-commit-id: e783ac4d5946403a9d608fe9dffa42212796b402