Added if statement to test for exome or WGS data. Works with WGS but not exome yet
Added exome only option to MakeCircosPlot. Will use WGS if available. If not, will use exome data. Will use WGS if both are available.
corrects regex in MakeCircosPlot.pm to work with the snv and indel files from exome, WGS, or exome and WGS
Corrects column used for sort command on top 100 gene names used for the outside circle of Circos plots
Based on suggested conflicts with PR #68
Merge branch 'trio_with_homopolymer' of https://github.com/jasonwalker80/genome into jasonwalker80-trio_with_homopolymer
Merge branch 'jasonwalker80-trio_with_homopolymer'
Merge branch 'master' of https://github.com/genome/genome
Merge branch 'master' of https://github.com/genome/genome
add sciclone plots1
sciclone update2
Whitespace
add sciclone to clinseq wkflw
whitespace
update which VAFs to use for sciclone
add test for clinseq sciclone
check for build before waiting on them
use common_name instead
refactor Base
refactor snv_indel_report
separate clonality plot for each datatype