[INTERNAL] start integration of gapped index
[FEATURE] Suffix metafunciton and suffix() function defined for Index
[FEATURE] starting step by step integration of generalised index. Commit because I want to switch to develop branch
just save current state
[FEATURE] adapted quicksort for suffixes (code from weese)
[DOC] Cleaned up old code
[FEATURE] Further rearrangement of code in order to extend QSort to modified suffixes
[FEATURE] Extension of IndexSa to Generalized IndexSa. Ongoing work
[FEATURE] Generalized Index with a sort as the default construction method and support for the Finder-Interface
[DEFECT] Failed to integrate generalized index into S-Tree-Interface. Stop work here and wait for David.
Merge branch 'develop' of https://github.com/seqan/seqan into develop
[FEATURE] cleaned find_index_esa.h, removed LCPE stuff, added dereferer to search arbitrary sorted lists - not only suffix arrays
[INTERNAL] added test for endless LF-loop
[INTERNAL] ongoing work in gapped index
[INTERNAL] Continue work on generalized Index
[INTERNAL] changed unsigned to Size where appropriate.
Integrating different construction methods
Integrating radixSort
Integrated several construction methods
Radix Sort seems to be defective in case of cyclic shapes