Fixed bug in Multiple Sequence Alignment. Ensure gap always gap & not change the first sequence when we are generating the final aligned sequences.
The .classpath file, gives me problems when I start pull-merge my code with the repository. So, I commit my version of conficted file to work with, because it is outside src folder.
Merge branch 'master' of github.com:theodori/WebRecommendation

Merge. The first version of all system.