Updated output folder to RMG-Java at commit bb21002
Updated kinetic libraries with adjlists containing paired electrons (new Py format).
Updating thermo libraries with new adjlists.

GRI-Mech3.0 and primaryThermoLibrary retained as originals due to nitrogen changes.
Fixes to adjlists in DFT_QCI_Thermo.  Commented out cis-butene.

RMG cannot differentiate between trans and cis-2-butene.  Remove cis-2-butene.
Commented out GRI-Mech3.0 version of OH in primaryThermoLibrary. Use AcTc instead.