Add to cal initialized 'sr_duplicate_list=NULL'
Includes adapter support in the fastq_read_t structure
Fixed libraries includes in Sconstruct files
Fixing warnings
Reverse complementary function moved from fastq_read, reverse string function added to string utils file and and array list replace function implemented
Merge branch 'develop-rna-sj' of https://github.com/opencb/hpg-libs into develop-adapters-mapq-merge-rna-sj
Linked libraries sorted in alphabetical order for ease of reading
Fixed compile flags: -fopenmp now included properly, -D_XOPEN_SOURCE=700 needed by some functions to compile properly, removed repeated flags
Added -D_REENTRANT, fixed more warnings adding missing library flags.
Merge branch 'develop' of github.com:opencb/hpg-libs into develop
Merge pull request #6 from josator/develop

Fixed libraries includes in Sconstruct files
BWT Index for more chromosomes
Merge branch 'develop-tmp' into develop
Fixed compile flag
Merge pull request #7 from josator/develop

Fixed compile flag
Fixed bug in SConstruct and fixed bug in malloc
Merge branch 'develop' of https://github.com/opencb/hpg-libs into develop
Delete some warnings
Merge branch 'develop' of https://github.com/opencb/hpg-libs into rna-sa-bwt
Fixed some warnings