Generating JSON file from VEP variant effects
Merge branch 'ebi-develop' of github.com:opencb/cellbase into ebi-develop
Skeleton of VariantEffectMongoDBSerializer
Creating DBObject from VariantEffect instance
New class VariantEffectMongoDBLoader and associated unit tests
loaders and serializers packages moved from package build.transform to build
New ConsequenceType updated
mongodb: VariantEffect serializer moved to VariantAnnotation
VariantEffectParser now uses VariantAnnotation class
server: RegionWSServer has earned a POST method for genes
mongodb: VariantAnnotation converter now also serializes frequencies, protein substitution scores and regulatory effects
build: two class moved to mongodb library marked as Deprecated
New VEP implementation intial work
Dependencies and POM fixes, now compiles properly against biodata-0.1
POM: version upgraded to 3.1.0
build: species.json updated to Ensembl 76
build: spcies.json updated
build: databases names updated to V3
Now Cellbase uses new biodata-0.2.0
Merge of develop and feature/consequence-type done, conflixts fixed