write legend file with id mapping to read group information
Merge branch 'master' of https://github.com/genome/genome into lumpy
find correct read group more efficiently
fixed typo
cleaned up formatting
add read_group_info to the output
use G::M::T::Sam::ListReadGroups
use Genome::File::Tsv to write legend file
Rename write_header_to_legend_file to create_legend_writer
Rename extract_id_and_lib_values to extract_id_and_lb_values
Pull extract_id_and_lb_values into the main _detect_variants so that it's only executed once for each bam
Revert "Updated SomaticValidation and SomaticValidationSv builds."

This reverts commit d40df198a01dc65d4725878b16e745815a6799b7.
Update blessed build

A change in the deployed version of joinx made the vcf files have
genotypes of "./." rather than ".", which is more correct
Merge pull request #20 from apregier/updated

New blessed builds
Merge pull request #14 from susannasiebert/lumpy

Add legend file for id mapping