Merge pull request #218 from iainrb/devel

Updated identity.t for new arguments to check_identity_bed.pl
Manipulate PATH for tests using scripts in ./bin and ../r/bin
Merge pull request #219 from keithj/devel

Manipulate PATH for tests using scripts in ./bin and ../r/bin
Added switch to ready_infinium.pl to allow Fluidgm QC data to be selected.

Revised the SNP database query for Sequenom to ignore SNP mapping
positions (there are sometimes multiple positions).

Added cross-check of Sequenom results against the SNP manifest
(multiplex composition does not always agree with data in SNP).
Further improvement to SNP db query which returns unconcatenated SNP
names.
Merge pull request #221 from keithj/devel

Revised the SNP database query for Sequenom
Use git describe to set package version
Added a module for script smoke tests

Added warning on finding no QC data to ready_infinium.pl
Corrected test counts and script name
Corrected the name used for the 'year' constant
Merge pull request #223 from keithj/devel

Ruby package version and script tests
Present a default 'unversioned' version number in cases where the Gem
packager will not accept the current git tag.
Merge pull request #224 from keithj/devel

Present a default 'unversioned' version number in cases where the Gem
Merge pull request #220 from iainrb/devel

Added prototype generate_yml helper script and test files
Additional user-facing script tests

Restored dcterms:title and infinum_sample to metadata fingerprint for
Infinium data files
Updated MANIFEST
Merge pull request #225 from keithj/devel

Additional user-facing script tests
Merge pull request #33 from wtsi-npg/devel

Merge recent changes from wtsi-npg:devel