fixed formatting
use confess $self->error_message instead of die
copy of GenerateVariantSeq17mer.pm to be used for factoring out common functionality
fixed formatting
use output and input filehandle correctly
minor code improvement
better variable names
improved if clause
factor the printing into a common subroutine
improve how the wildtype_arr and mutant_arr are constructed
move writing to output file inside of the print_fasta_entry subroutine
use sequence length instead of hardcoded values
Optionally create a lookup key file for the fasta deflines
fixed formatting
factor out common functionality between the different if-else clauses
fixed formatting
move key file writing to own subroutine
refactor to keep functionality of subroutines clearer
update to work with new annotation format
change parameters to be a hash