Add homopolymer indel filter to trio reports.  Use meaningful output file extensions. Update the test data directory with the new output files.
Merge branch 'master' of https://github.com/genome/genome into trio_with_homopolymer
Add the test data
Remove breakpoint from test.
Merge remote-tracking branch 'origin/master' into trio_with_homopolymer
Replace vcf-homopolymer filter with vcf
Merge pull request #59 from jasonwalker80/trio_with_homopolymer