Add default params for compat with snap2
1.0beta.17: fix bug for very short FASTQ files
1.0dev.62: merge in fix for small FASTQ files from master branch
Least-total-indels, other CIGAR string fixes
1.0dev.63: merge in CIGAR changes with dev.62
Merge branch 'dev' of github.com:amplab/snap into dev
update linux binary to dev63