fix reading from pipes
fix bin calculation in SAM parser
fix unittests to compile with LDC
more informative error message for opening files
allow to change bases/quals
don't make GC allocations in compressor
started to work on lomereiter/sambamba#58
fix whitespace
new file
fixed a noncompiling template
avoid nested context
return correct end vo for last reference
add testcase
fixes lomereiter/sambamba#78
fix a bug in BED intersection routine
fix compilation on 2.065
MultiBamReader bed support
more general pileup, MultiBamRead type
BamRegion new methods
hasReference and opIndex methods for SamReader