Added a malariamine.

This is a replacement for the use of flymine as the defacto testing
vehicle for bio webapps.
First version of setup.sh
Which should live in the biotestmine dir
Make sure we adjust tomcat properties.
Added comments to mirror tutorial.
All the bits are there. Now to get it all working
A fully working boostrap script.
Build fails without this file
Build fails without these dummy files.
Better setup.sh, learning lessions from biotestmine
A superior bootstrapping experience.
Improved readme