Create gh-pages branch via GitHub
Messing around with Markdown
Messing around with Jekyll
Can't figure out how GitHub Pages is using Jekyll
Missed a curly brace
Still messing around with Jekyll

Imported the Jekyll GitHub Page files as a starting point for hacking.
Fixing links and other things
Continuing to hack on Jekyll
Starting to customize for APBS/PDB2PQR

Mainly working on index.html and associated files
More home page changes
This is painful...
Trying to tweak the images and layout....

...still just on the front page
Making progress
Missed a quotation mark
Warnings are tricky
Built out website structure

Use TODO comments to figure out what needs to be done next.
Updating with PDB2PQR web server information
Fixed Markdown error

Doesn't like & symbols in URLs
Markdown is annoying
Problem solved?

Don't put Markdown inside HTML inside Markdown