Merge with ensembl + new MVC structure
also includes scaleMap
Outstanding ensembl commits merged
Fixes for the menues (not very clean, but it works)
Fixes for message container, tracks menu and track controls
Some css and tooltips fixes
Removed deprecated __proto__
Made Stranded controller work.
Tidied.
Removed labelSpacing because it isn't considered when bumping, so labels get draw badly.
Will replace with featureMargin (top, right, bottom, left), or something
Fix processed pseudogene colour
Sharpen strokeRect for exons
Moved setURL to Model
Default track to Genoverse.Track if track has a type which doesn't exist
style for static tracks
Stop background image appearing before it is drawn - causes a broken image to flash up
Static tracks
Removed usage of Patch track scripts
+ Tomato genome example
+GFF3 basic model for transctipt
slight fixes for Transcript view
all tracks uncommented
Fix for menues appearing under the track message container