Received review from bioconductor, AO - will now work on the suggestions
first part of massive reworking, after suggestions of bioc reviewer
now moving on to changes in main functions
channel related stuff seems to be fixed
removed reproducibleColorLabels, will probably revisit it in further code versions?
removed reproducibleColorLabels, this time for real :)
removed further unused lines of code
reformatted most of the documentation
massive change to S4 ahead. serious point of no return :)
started with S4 conversion, files prepared
prepared all the structure. will fix smaller things such as removal of now not so relevant functions, and the call attr to framelist
so far so good
addes constructor for Frames
again, so far so good :)
again, so far so good :) - now rewriting the tracking func link.particles
seems the tracking was correctly done. now on with trajectories
and again, so far so good. now it is up to the traj plots, kinem functions, and then add contours
so far so good, again and again. done with nasty add contours variants with workaround and tmp list
so far so very very good. just need to do crop.Frames. then move on to generic/methods. then docu. then vignette reworked
now on with crop.Frames