SPARK-1064

This reopens PR 649 from incubator-spark against the new repo

Author: Sandy Ryza <sandy@cloudera.com>

Closes #102 from sryza/sandy-spark-1064 and squashes the following commits:

270e490 [Sandy Ryza] Handle different application classpath variables in different versions
88b04e0 [Sandy Ryza] SPARK-1064. Make it possible to run on YARN without bundling Hadoop jars in Spark assembly
Spark-1163, Added missing Python RDD functions

Author: prabinb <prabin.banka@imaginea.com>

Closes #92 from prabinb/python-api-rdd and squashes the following commits:

51129ca [prabinb] Added missing Python RDD functions Added __repr__ function to StorageLevel class. Added doctest for RDD.getStorageLevel().
[SPARK-1232] Fix the hadoop 0.23 yarn build

Author: Thomas Graves <tgraves@apache.org>

Closes #127 from tgravescs/SPARK-1232 and squashes the following commits:

c05cfd4 [Thomas Graves] Fix the hadoop 0.23 yarn build
[SPARK-1233] Fix running hadoop 0.23 due to java.lang.NoSuchFieldException: DEFAULT_M...

...APREDUCE_APPLICATION_CLASSPATH

Author: Thomas Graves <tgraves@apache.org>

Closes #129 from tgravescs/SPARK-1233 and squashes the following commits:

85ff5a6 [Thomas Graves] Fix running hadoop 0.23 due to java.lang.NoSuchFieldException: DEFAULT_MAPREDUCE_APPLICATION_CLASSPATH
Fix #SPARK-1149 Bad partitioners can cause Spark to hang

Author: liguoqiang <liguoqiang@rd.tuan800.com>

Closes #44 from witgo/SPARK-1149 and squashes the following commits:

3dcdcaf [liguoqiang] Merge branch 'master' into SPARK-1149
8425395 [liguoqiang] Merge remote-tracking branch 'upstream/master' into SPARK-1149
3dad595 [liguoqiang] review comment
e3e56aa [liguoqiang] Merge branch 'master' into SPARK-1149
b0d5c07 [liguoqiang] review comment
d0a6005 [liguoqiang] review comment
3395ee7 [liguoqiang] Merge remote-tracking branch 'upstream/master' into SPARK-1149
ac006a3 [liguoqiang] code Formatting
3feb3a8 [liguoqiang] Merge branch 'master' into SPARK-1149
adc443e [liguoqiang] partitions check  bugfix
928e1e3 [liguoqiang] Added a unit test for PairRDDFunctions.lookup with bad partitioner
db6ecc5 [liguoqiang] Merge branch 'master' into SPARK-1149
1e3331e [liguoqiang] Merge branch 'master' into SPARK-1149
3348619 [liguoqiang] Optimize performance for partitions check
61e5a87 [liguoqiang] Merge branch 'master' into SPARK-1149
e68210a [liguoqiang] add partition index check to submitJob
3a65903 [liguoqiang] make the code more readable
6bb725e [liguoqiang] fix #SPARK-1149 Bad partitioners can cause Spark to hang
SPARK-1162 Added top in python.

Author: Prashant Sharma <prashant.s@imaginea.com>

Closes #93 from ScrapCodes/SPARK-1162/pyspark-top-takeOrdered and squashes the following commits:

ece1fa4 [Prashant Sharma] Added top in python.
SPARK-1160: Deprecate toArray in RDD

https://spark-project.atlassian.net/browse/SPARK-1160

reported by @mateiz: "It's redundant with collect() and the name doesn't make sense in Java, where we return a List (we can't return an array due to the way Java generics work). It's also missing in Python."

In this patch, I deprecated the method and changed the source files using it by replacing toArray with collect() directly

Author: CodingCat <zhunansjtu@gmail.com>

Closes #105 from CodingCat/SPARK-1060 and squashes the following commits:

286f163 [CodingCat] deprecate in JavaRDDLike
ee17b4e [CodingCat] add message and since
2ff7319 [CodingCat] deprecate toArray in RDD
Fix example bug: compile error

Author: jianghan <jianghan@xiaomi.com>

Closes #132 from pooorman/master and squashes the following commits:

54afbe0 [jianghan] Fix example bug: compile error
hot fix for PR105 - change to Java annotation

Author: CodingCat <zhunansjtu@gmail.com>

Closes #133 from CodingCat/SPARK-1160-2 and squashes the following commits:

6607155 [CodingCat] hot fix for PR105 - change to Java annotation
SPARK-1019: pyspark RDD take() throws an NPE

Author: Patrick Wendell <pwendell@gmail.com>

Closes #112 from pwendell/pyspark-take and squashes the following commits:

daae80e [Patrick Wendell] SPARK-1019: pyspark RDD take() throws an NPE
[SPARK-1237, 1238] Improve the computation of YtY for implicit ALS

Computing YtY can be implemented using BLAS's DSPR operations instead of generating y_i y_i^T and then combining them. The latter generates many k-by-k matrices. On the movielens data, this change improves the performance by 10-20%. The algorithm remains the same, verified by computing RMSE on the movielens data.

To compare the results, I also added an option to set a random seed in ALS.

JIRA:
1. https://spark-project.atlassian.net/browse/SPARK-1237
2. https://spark-project.atlassian.net/browse/SPARK-1238

Author: Xiangrui Meng <meng@databricks.com>

Closes #131 from mengxr/als and squashes the following commits:

ed00432 [Xiangrui Meng] minor changes
d984623 [Xiangrui Meng] minor changes
2fc1641 [Xiangrui Meng] remove commented code
4c7cde2 [Xiangrui Meng] allow specifying a random seed in ALS
200bef0 [Xiangrui Meng] optimize computeYtY and updateBlock
SPARK-1183. Don't use "worker" to mean executor

Author: Sandy Ryza <sandy@cloudera.com>

Closes #120 from sryza/sandy-spark-1183 and squashes the following commits:

5066a4a [Sandy Ryza] Remove "worker" in a couple comments
0bd1e46 [Sandy Ryza] Remove --am-class from usage
bfc8fe0 [Sandy Ryza] Remove am-class from doc and fix yarn-alpha
607539f [Sandy Ryza] Address review comments
74d087a [Sandy Ryza] SPARK-1183. Don't use "worker" to mean executor
SPARK-1236 - Upgrade Jetty to 9.1.3.v20140225.

Author: Reynold Xin <rxin@apache.org>

Closes #113 from rxin/jetty9 and squashes the following commits:

867a2ce [Reynold Xin] Updated Jetty version to 9.1.3.v20140225 in Maven build file.
d7c97ca [Reynold Xin] Return the correctly bound port.
d14706f [Reynold Xin] Upgrade Jetty to 9.1.3.v20140225.