Refactored a method of MetaDataWithIncludes with code taken from the OdmToFilesConverter.java. Todo: use this machinery for the clinical data.
Some changes in the clinical exportWriter with regard to defining study.
Egg-of-Colombus solution for dealing with metadata includes. This approach might need extension for more complicated cases in the future.
Fixed the problem with html tags and scripts within the fields that are written to the exported files. Added jsoup in the library for this reason.
Preparing for adding an extra column with the studies, when modeled as sites via includes.
Added extra column with study-sites. Halfway trying to avoid this addition for study set-ups with only one site.
Avoided that extra column for study sites is added for studies with only one site.
Created a default solution for the case that two columns were given exactly the same names in tranSMART.
Various improvements.
Merge pull request #2 from FreekDB/master

Added guava jar file to lib directory
Handled writing as tab separated file correctly, using openCSV. Postponed the committing of newly generated sources, xsd files and build file.
Automated generation of Java sources now done with xsd schema files downloaded from OpenClinica. They follow the ODM standard, but support OpenClinica extensions in addition.
Created two sets of generated sources: 1 from the standardized ODM xsd files and 1 from the OpenClinica xsd files.
Code improvements through checkstyle.
Improved the code through checkstyle.
Improved code with checkstyle.
Release version but with concept mapping file related code still included.
Version ready for release. Concept mapping related code removed. Removed a bug that was introduced in the release version in which the concept mapping code was still present.
Last issues for release. Logging not working properly yet, however.
First release version. Test class adjusted. Status updated in readme.