added the method for adjusting the pulse train and the reading the intervals
added engineering flags (compensation enabled)
added Optical History (back in)
changed the size of alignment micros
rebuild scope mux, sc FPGA IO Matrix, MRC, and Modbus Inspector
 * fixed merging error on exit of both loops

Scope Mux - fixed enabling the FPGA resource
SC FPGA IO Matrix - fixed enabling the FPGA resource