Move bin/phpdoc.php to bin/phpdoc

Maintain bin/phpdoc.php for the time being but trigger an
E_USER_DEPRECATED error
#1130: Add feature to test type resolution

In issue #1130 it was indicated that arrays were not correctly resolved.
During research it was concluded that this is a design flaw and by
adding these tests we can verify whether the fixes in the upcoming
commits resolve this issue.
#1130: Create type collection
#1130: Create documentation for the AST creation
Merge branch 'develop' into 1130
Merge branch 'develop' of github.com:phpDocumentor/phpDocumentor2 into 1130
#1130: Continuing refactoring of types to value objects
Merge branch 'develop' into feature/1130
#1130: Assemble Types
#1130: Properly render CollectionDescriptors
#1130: Fix erroneous Types
Merge branch 'develop' of github.com:phpDocumentor/phpDocumentor2 into feature/1130
#1130: Fixing broken tests
#1130: Fix coding standards violations
#1130: Reduce complexity of TypeCollectionAssembler
#1130: Fix conflict between class names
#1130: Add missing property
#1130: Convert types to Value Objects
#1130: Commit test and refactoring for ArgumentAssembler
Merge branch 'rename-bin-file' of https://github.com/tommygnr/phpDocumentor2 into feature/965

Conflicts:
	bin/phpdoc.php
	build.xml
	composer.json
	docs/manual/for-users/getting-started/running-the-application.rst
	docs/manual/for-users/installation/troubleshooting.rst
	features/bootstrap/ExecutionContext.php
	src/phpDocumentor/PharCompiler.php