make argt subject to setup
WIP
initial makefile, copied from Maxcommonsubseq
adapted from Maxcommonsubseq
adapted from maxcommonsubseq
added smithwaterman
remove fetch stuff
adapted from maxcommonsubseq
change maxcommonsubseq to smithwaterman
remove import of MCSAlgorithm
change to SWAlgorithm, for use by Top
somewhere I did these changes already.
remove MCSAlgorithm, update to SWAlgorithm
remove writeClients
add correct values of tb and te to second recursive calls
fix initialization of GotohB
try to get min logic right for single cycle operation
move cc,dd,rr,ss reads into a single cycle
change test strings to correspond to python version
compiles now