STL tags are included elsewhere
Changed stdout output in scripts to stderr;
updated changelog
pep8
ignore Doxyfile
Merge pull request #648 from ged-lab/fix/odds-n-ends

Fix/odds n ends
Fixed for pep8
polished for pylint
Merge pull request #626 from b-wyss/fix/scriptstderr

Changed stdout output in three scripts to stderr
first pass seqan impl
add the seqan headers
point to the seqan headers
Add new test, new data
remove impl specific assert
Evidently NoMoreReadsAvailable was never thrown before?
update tests for early failure mode
restore these files; remove later
remove unneeded library link
cleanup includes
Revert "cleanup includes"

This reverts commit ac399a5666e0bbc5c61fc450f9132cb490d6fe77.
remove Hasher and other unused code