Small fixes needed to running component through ergatis
Merge branch 'master' of https://github.com/jorvis/ergatis
fixed bug in test to remove circular genes that extend beyond origin where strand number was wrong in if clause
Split the results from summarize_mugsy_comparative in clovr comparative pipeline
Split output from summarize_mugsy_comparative_pipeline
made changes to rna-seq operon prediction scripts to fix bugs with parameters
Initial commit of db-modifying Genbank submission components
fixed bugs in predict_operon component
improved file parsing in genbank_submission components by combining multiple mapping files into one
initial commit of fix_gene_symbols component
initial commit of dump_table component
initial commit of create_db_list_file component
adding remove_hypothetical_ec.pl to the remove_db_gene_syms_with_hypos component
Renaming Prokaryotic_Annotation_Pipeline_Operon_Prediction to RNA_Seq_Operon_Prediction and made changes to template to reflect this
fixed but with xml
fixed but with xml
fixed but with xml
fixed bug with config
fixed filepath bug in create_db_list_file.pl
fixed bug in assign_dbxref_ids.pl