Add some comments, general cleanup. Remove the option of using 'boundary' for position since that was never implemented.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2089 244a8438-9d6d-46c2-a098-b74c898f6b90
Make compile after recent changes.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2090 244a8438-9d6d-46c2-a098-b74c898f6b90
Part 1 of Juliane's r1880 from her branch: Introduce a new refinement criterion that takes into account only the non-adiabatic part of the temperature.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2091 244a8438-9d6d-46c2-a098-b74c898f6b90
Part 2 of Juliane's r1880 from her branch: Allow scaling refinement criteria differently for individual compositional fields.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2092 244a8438-9d6d-46c2-a098-b74c898f6b90
Merge Juliane's r1881 from her branch: Introduce a minimal refinement level.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2093 244a8438-9d6d-46c2-a098-b74c898f6b90
Minor edits of the previous change.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2094 244a8438-9d6d-46c2-a098-b74c898f6b90
Merge Juliane's r1882: Introduce a refinement criterion based on the viscosity.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2095 244a8438-9d6d-46c2-a098-b74c898f6b90
Add a clarification.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2096 244a8438-9d6d-46c2-a098-b74c898f6b90
Adjust output.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2098 244a8438-9d6d-46c2-a098-b74c898f6b90
Check in the proper file.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2099 244a8438-9d6d-46c2-a098-b74c898f6b90
Adjust output.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2100 244a8438-9d6d-46c2-a098-b74c898f6b90
Fix the same bug again where we accidentally use numeric_limits::min() instead of -numeric_limits::max().

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2101 244a8438-9d6d-46c2-a098-b74c898f6b90
Adjust output.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2102 244a8438-9d6d-46c2-a098-b74c898f6b90
Fix an oversight when computing non-dimensional temperatures.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2103 244a8438-9d6d-46c2-a098-b74c898f6b90
Adjust tests.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2104 244a8438-9d6d-46c2-a098-b74c898f6b90
Update these results.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2105 244a8438-9d6d-46c2-a098-b74c898f6b90
add an assertion

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2108 244a8438-9d6d-46c2-a098-b74c898f6b90
move the thermal diffusivity function from the material model interface to helper functions

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2109 244a8438-9d6d-46c2-a098-b74c898f6b90
fix a bug in the iterated IMPES scheme

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2111 244a8438-9d6d-46c2-a098-b74c898f6b90
Remove the need to specify output directories and plugin shared libs by hand. Rather, do this as part of running cmake.

git-svn-id: https://svn.aspect.dealii.org/trunk/aspect@2121 244a8438-9d6d-46c2-a098-b74c898f6b90