unknown change
deleted files
deleted files
added paired files
updated bowtie.sh, trimfiltercheck.sh
updated bowtie.sh, trimfiltercheck.sh
updated trimfiltercheck.sh for trimmomatic (paired end adaptor+quality trimming)
fixed trimfiltercheck.sh again.
updated
fixed bowtie
updated postprocess.sh and cufflinks.sh
updated cufflinks.sh, expression.sh
updated expression.sh
updated expression.sh
changed multiple files, added more description.
more automations (CIRCOS!!) and edits for summarizing alignment output
updated for aligning unpaired reads
separated visualization from expression levels, updated for utilizing unpaired reads
updated alignment summary, unpaired reads, circos automation
quick change