- Added autodetect of .gz human reference
- Automatic decompression of .gz human reference before analysis
- fixed merged target list interval directory
- clean-up of intersectCollect.pl, add_depth.pl and qcCollect.pl
- Fixed GATKReduceReads filending typo
- Added sub routine for checking if a file is compressed or not
- Rewrote InfilesReformat using new sub routine
Fixed polyphen columnNames