col.prob.R updated so that distance weights now allow for barriers, using METAPOP::make.dist.weights.barrier
test case for barrier effect, applying a fake barrier across the donnybrook metapop added into col.prob. Works fine.
fixed typo donnyb*r*ook
fixed argument mixup that was preventing col.prob use barrier related arguments. Added test case that plots colonisation probabilities with and without barrier effects to confirm that barrier now works as intended.
Time_ext now works with barrier effects. Working example included.
minor fix to ext.prob documentation
optimum ponds function now works with barriers, but PAINFULLY SLOW. problem is with make.dist.weights.barrier and friends in package METAPOP. Uses loops to step through checking whether each pair of sites is separated by a a barrier. Will need to speed this up significantly to make this approach work.
Much faster, working version of OPTIMUM_PONDS now working. Does barrier/weight calcs once, rather than at every evaluation of TE.
Tidied up description: fixed licence string, and added "Imports" statement.
Tidied up stray undocumented args in Time_ext
fixed minor error in example.
Namespace now imports METAPOP
imports METAPOP
fixed docs. imports METAPOP
imports METAPOP
imports METAPOP
imports METAPOP
x
updates to NAMESPACE and DESCRIPTION. Experimenting with different depend/import combos to try to pass R CMD check
removed apparently superfluous @import METAPOP statements