Updated pores and throats method in Tools, these now are the official methods to get indices
- get_pore_indices and get_throat_indices are deprecated, but still work
- This is part of trimming the excess syntax
Added much improved object naming
- Base now has a _name attribute
- Base now has _set_name and _get_name, which are bound using a property called name
- The _set_name ensures no object of the same type has the same name, AND prevent renaming of Geometries
changed Tools/set_data() to now write scalars when pores/throats='all' and data=scalar, otherwise it broadcast's the scalar to the the specified locations.
Deleted a lot of the object-linking crud
- it is still used for some checks, but now that the setter/getters are not directing traffic all over the place this is less relied upon