Merge branch 'refactoring' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring into remote
Merge branch 'remote' of /clients1/delaram/Projects/gems/gmml into remote
Merge branch 'refactoring' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring into remote
Merge branch 'refactoring' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring into remote
Topology file extraction
Merge branch 'refactoring' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring into refactoring
Merge branch 'refactoring' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring into remote
update
Preprocessed pdb file head and tail amino acid residue have to be checked with aminoct and aminont lib files if they are categorized as unrecognized in first step of processing, the process of unrecognized residue extraction has been changed respectively (as the pdb residues are 3 characters but aminont and aminoct residues might have 4 characters)
Pdb reader bug fixed for irregular pdb files which have MODEL indicator but not ENDMDL indicator and such other irregularities
Sequence number removal from connect card that does not exist anymore
Merge branch 'refactoring' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring into remote
Merge branch 'remote' of /clients1/delaram/Projects/gems/gmml into refactoring
Merge branch 'refactoring' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring into refactoring
Pdb get residues function bug fix
Merge branch 'refactoring' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring into remote
Unknown heavy atoms for tail and head amino acid residues in a chain has been modified to fix the bug 100
Middle of chain unrecognized residues detection has been modified to fix the bug 103
Merge branch 'refactoring' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring into refactoring
Cleaning up
Unrecognized residues in the middle has been modified