Aoskim

More reorg:
- in "simulation assistance" section (does this need to be renamed?), put cycamore first. 
- melded (squashed?) the framework structure section with the ABM section because it initially came from the intro and thus served as a great intro to the section with no rewording

Added a more accurate intro section to methods and implementation (please edit brutally!)

Skimmed otherwise. Fixed figure captions, stuff like that.

STILL CANNOT FIGURE OUT SUBSUBSECTION LABELING PROBLEM!!!!! HELP!
Quelle horreur! I will make sure the bf's don't make it through. they were edits I was unsure about so they are there to draw attention, but that tweet definitely changes my mind on how to go about that!

Regarding what to say, I'm happy to leave community-driven in there (because now I understand how collaborative is inappropriate). I was trying to think of something else to avoid too much repetition. But really, twice isn't too much.