Start implementing sbatch-or-local execution mode code (should work for sample-level, not yet implemented for seqrun)
Update database models to use a composite primary key
Remove ipdb import
Bugfixes
remove comment
Bugfix
Update Charon fields to match new API/Document schema
Remove unused code
Change field name for projects
Update to use new status codes / fields for Charon
I don't recall precisely why I did this but I assume it was important
Update to create projects if they don't exist in Charon
Update status values / field names to match new Charon schema
typo
s/status/analysis_status/ for samples
Catch requests.exceptions.Timeout and make it a CharonError
Miscellany
Update script with new options
Typo/bug/whatever
Update status values, change workflow to best_practice_analysis to standardize naming