added commands to blast Copci genes against the Augustus gene predictions
Added scripts to compare Exonerate/Augustus gene predictions to reference and to run Blobology
Added command to filter out short (<500 bp) contigs before blasting/mapping

When I tried this with all contigs, there were so many short ones that very few contigs
had blast matches
added FastQC quality reports for all datasets
added script to calculate the % gap characters in each sequence in an alignment